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Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22
作者:
Zhang, Junpeng
;
Liu, Lin
;
Xu, Taosheng
;
Zhang, Wu
;
Zhao, Chunwen
收藏
  |  
浏览/下载:149/0
  |  
提交时间:2022/01/10
miRNA
mRNA
Single-cell miRNA-mRNA co-sequencing
Pseudo-cell interpolation
Cell-specific miRNA regulation
Single-cell clustering analysis
Cell-cell crosstalk
Chronic myelogenous leukemia
RNAcentral: a hub of information for non-coding RNA sequences
期刊论文
NUCLEIC ACIDS RESEARCH, 2019, 卷号: 47, 期号: D1, 页码: D221-D229
作者:
Orlic-Milacic, Marija
;
Chan, Patricia P.
;
Lowe, Todd M.
;
Bruford, Elspeth
;
Seal, Ruth
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  |  
浏览/下载:61/0
  |  
提交时间:2019/08/16
FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs
期刊论文
BMC Systems Biology, 2019, 卷号: Vol.13 No.2Suppl
作者:
Xiaoying Li
;
Yaping Lin
;
Changlong Gu
;
Jialiang Yang
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/13
Disease-related miRNA
Leave-one-out cross validation
miRNA family information
miRNA cluster information
Nearest neighbor recommendation algorithm
FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs.
期刊论文
BMC systems biology, 2019, 卷号: Vol.13 Suppl 2, 页码: 26
作者:
Xiaoying Li
;
Yaping Lin
;
Changlong Gu
;
Jialiang Yang
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2019/12/17
Disease-related miRNA
Leave-one-out cross validation
Nearest neighbor recommendation algorithm
miRNA cluster information
miRNA family information
MicroRNAs and their targets by high-throughput sequencing and differentially expressed analysis in five Miscanthus species
期刊论文
Industrial Crops and Products, 2018, 卷号: 118, 页码: 196-205
作者:
Sheng, Jiajing
;
Zheng, Xingfei
;
Wang, Jia
;
Liu, Shuguang
;
Pang, Ming
收藏
  |  
浏览/下载:18/0
  |  
提交时间:2019/12/04
MiRNA
microRNA
EST
expressed sequence tag
NCBI
national center for biotechnology information
M. lutarioriparius
Miscanthus lutarioriparius
M. sacchariflorus
Miscanthus sacchariflorus
M. floridulus
Miscanthus floridulus
M. sinensis
Miscanthus sinensis
M. giganteous
Miscanthus giganteous
GO
gene ontology
Rfam
RNA family database
BLAST
basic local alignment tool
TPM
transcripts per million
eEF-1α
Eukaryotic elongation factor 1α
EIF-4α
eukaryotic initiation factor 4α
UBC
ubiquitin-conjugating enzyme
UBQ
ubiquitin
TUBB
β-tubulin
CYP
cyclophilin
Energy crop
Miscanthus
miRNAs
Targets genes
High-throughput sequencing
Identification of circular RNAs and their targets during tomato fruit ripening
期刊论文
POSTHARVEST BIOLOGY AND TECHNOLOGY, 2018, 卷号: 136, 页码: 90-98
作者:
Yin, Junliang
;
Liu, Mengyu
;
Ma, Dongfang
;
Wu, Jiawen
;
Li, Shenglan
收藏
  |  
浏览/下载:15/0
  |  
提交时间:2022/02/25
circRNAs
Tomato
Fruit ripening
cis-regulator
miRNA sponge
Combining Gene Expression and Interactions Data with miRNA Family Information for Identifying miRNA-mRNA Regulatory Modules
期刊论文
INTELLIGENT COMPUTING THEORIES AND APPLICATION, ICIC 2017, PT II, 2017, 卷号: Vol.10362, 页码: 311-322
作者:
Luo, Dan
;
Wang, Shu-Lin
;
Fang, Jianwen
收藏
  |  
浏览/下载:6/0
  |  
提交时间:2019/12/31
miRNA-mRNA regulation modules
Gene expression
miRNA family
Hierarchical Identification of MicroRNA Families for Biomedical Applications
期刊论文
http://dx.doi.org/10.1166/jctn.2014.3441, 2014
Chen, Ke
;
Zou, Quan
;
Peng, Zhiping
;
Ke, Wende
;
Zuo, Jinglong
;
邹权
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2015/07/22
PLANT OPTIMIZATION ALGORITHM
NONCODING RNAS
PREDICTION
CLASSIFICATION
MODEL
SEQUENCES
FEATURES
DATABASE
ELEGANS
TARGETS
Transcriptome-Wide Identification and Characterization of MicroRNAs from Castor Bean (Ricinus communis L.)
期刊论文
PLOS ONE, 2013, 卷号: 8, 期号: 7, 页码: -
Xu, Wei
;
Cui, Qinghua
;
Li, Fei
;
Liu, Aizhong
收藏
  |  
浏览/下载:9/0
  |  
提交时间:2017/06/12
FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs
会议论文
17th Asia Pacific Bioinformatics Conference (APBC), Wuhan, PEOPLES R CHINA, 2019
作者:
Li, XY
;
Lin, YP
;
Gu, CL
;
Yang, JL
收藏
  |  
浏览/下载:2/0
  |  
提交时间:2019/12/13
Disease-related miRNA
Leave-one-out cross validation
miRNA family information
miRNA cluster information
Nearest neighbor recommendation algorithm
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