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Prediction of lncRNA-disease associations via an embedding learning HOPE in heterogeneous information networks
期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2021, 卷号: 23, 期号: 3, 页码: 277-285
作者:
Zhou, JR (Zhou, Ji-Ren)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Cheng, L (Cheng, Li)[ 1 ]
;
Ji, BY (Ji, Bo-Ya)[ 1,2 ]
收藏
  |  
浏览/下载:26/0
  |  
提交时间:2021/05/06
In silico drug repositioning using deep learning and comprehensive similarity measures
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 增刊3, 页码: 1-14
作者:
Yi, HC (Yi, Hai-Cheng) 1 , 2
;
You, ZH (You, Zhu-Hong) 1
;
Wang, L (Wang, Lei) 1
;
Su, XR (Su, Xiao-Rui) 1 , 2
;
Zhou, X (Zhou, Xi) 1
收藏
  |  
浏览/下载:31/0
  |  
提交时间:2021/07/14
Drug repositioningDrug-disease interactionGated recurrent unitsGaussian interaction profile kernelMachine learning
DBMDA: A Unified Embedding for Sequence-Based miRNA Similarity Measure with Applications to Predict and Validate miRNA-Disease Associations
期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2020, 卷号: 19, 期号: 3, 页码: 602-611
作者:
Zheng, K (Zheng, Kai)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Wang, L (Wang, Lei)[ 2,3 ]
;
Zhou, Y (Zhou, Yong)[ 1 ]
;
Li, LP (Li, Li-Ping)[ 2 ]
收藏
  |  
浏览/下载:48/0
  |  
提交时间:2020/04/21
RPI-SE: a stacking ensemble learning framework for ncRNA-protein interactions prediction using sequence information
期刊论文
BMC BIOINFORMATICS, 2020, 卷号: 21, 期号: 1, 页码: 1-10
作者:
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Wang, MN (Wang, Mei-Neng)[ 3 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1 ]
;
Wang, YB (Wang, Yan-Bin)[ 1 ]
收藏
  |  
浏览/下载:19/0
  |  
提交时间:2020/04/21
Sequence analysis
RNA-protein interaction
ncRNA
Ensemble learning
Position weight matrix
Legendre moments
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 972-980
作者:
Wang, L (Wang, Lei)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Zhou, FF (Zhou, Fengfeng)[ 4,5 ]
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  |  
浏览/下载:27/0
  |  
提交时间:2020/12/09
Proteins
RNA
Convolution
Neural networks
Benchmark testing
Feature extraction
Sparse matrices
Convolution neural network
extreme learning machine
RNA-protein interactions
sequence
Predicting miRNA-disease association from heterogeneous information network with GraRep embedding model
期刊论文
SCIENTIFIC REPORTS, 2020, 卷号: 10, 期号: 1, 页码: 1-12
作者:
Ji, BY (Ji, Bo-Ya)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Cheng, L (Cheng, Li)[ 1 ]
;
Zhou, JR (Zhou, Ji-Ren)[ 1 ]
;
Alghazzawi, D (Alghazzawi, Daniyal)[ 3 ]
收藏
  |  
浏览/下载:19/0
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提交时间:2020/12/09
NLPEI: A Novel Self-Interacting Protein Prediction Model Based on Natural Language Processing and Evolutionary Information
期刊论文
EVOLUTIONARY BIOINFORMATICS, 2020, 卷号: 16, 期号: 12, 页码: 1-12
作者:
Jia, LN (Jia, Li-Na)[ 1 ]
;
Yan, X (Yan, Xin)[ 2,3 ]
;
You, ZH (You, Zhu-Hong)[ 4 ]
;
Zhou, X (Zhou, Xi)[ 4 ]
;
Li, LP (Li, Li-Ping)[ 4 ]
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2021/03/19
Self-interacting protein
natural language processing
evolutionary information
stacked auto-encoder
Age Is Important for the Early-Stage Detection of Breast Cancer on Both Transcriptomic and Methylomic Biomarkers
期刊论文
FRONTIERS IN GENETICS, 2019, 卷号: 10, 期号: 3, 页码: 1-13
作者:
Feng, X (Feng, Xin)[ 1,2 ]
;
Li, JL (Li, Jialiang)[ 2,3 ]
;
Li, H (Li, Han)[ 2,3 ]
;
Chen, H (Chen, Hang)[ 1,2 ]
;
Li, F (Li, Fei)[ 2,3 ]
收藏
  |  
浏览/下载:80/0
  |  
提交时间:2019/04/18
age
feature selection
TriVote
BRCA
classification
transcriptome
methylome
In Silico Prediction of Small Molecule-miRNA Associations Based on the HeteSim Algorithm
期刊论文
MOLECULAR THERAPY-NUCLEIC ACIDS, 2019, 卷号: 14, 期号: 3, 页码: 274-286
作者:
Qu, J (Qu, Jia)[ 1 ]
;
Chen, X (Chen, Xing)[ 1 ]
;
Sun, YZ (Sun, Ya-Zhou)[ 2 ]
;
Zhao, Y (Zhao, Yan)[ 1 ]
;
Cai, SB (Cai, Shu-Bin)[ 2 ]
收藏
  |  
浏览/下载:79/0
  |  
提交时间:2019/05/14
A High Efficient Biological Language Model for Predicting Protein-Protein Interactions
期刊论文
CELLS, 2019, 卷号: 8, 期号: 2, 页码: 1-12
作者:
Wang, YB (Wang, Yanbin)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Yang, S (Yang, Shan)[ 1,2 ]
;
Li, X (Li, Xiao)[ 1 ]
;
Jiang, TH (Jiang, Tong-Hai)[ 1 ]
收藏
  |  
浏览/下载:118/0
  |  
提交时间:2019/05/16
protein-protein interactions
bio-language processing
sentencepiece
convolution neural network
unigram language model
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