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西安交通大学 [9]
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复旦大学上海医学院 [5]
北京大学 [4]
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期刊论文 [33]
会议论文 [7]
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Accucopy: accurate and fast inference of allele-specific copy number alterations from low-coverage low-purity tumor sequencing data
期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: 1, 页码: 18
作者:
Fan, Xinping
;
Luo, Guanghao
;
Huang, Yu S.
收藏
  |  
浏览/下载:214/0
  |  
提交时间:2021/05/24
Cancer genomics
Copy number alterations
Next-generation sequencing
Prediction of Driver Modules via Balancing Exclusive Coverages of Mutations in Cancer Samples
期刊论文
ADVANCED SCIENCE, 2019, 卷号: 6, 期号: 4, 页码: 9
作者:
Gao, Bo
;
Zhao, Yue
;
Li, Yang
;
Liu, Juntao
;
Wang, Lushan
收藏
  |  
浏览/下载:60/0
  |  
提交时间:2019/04/02
cancer genomics
coverage
driver modules
exclusivity
signaling networks
A graph-based algorithm for estimating clonal haplotypes of tumor sample from sequencing data.
期刊论文
BMC medical genomics, 2019, 卷号: 12, 页码: 27
作者:
Wang Yixuan
;
Zhang Xuanping
;
Ding Shuai
;
Geng Yu
;
Liu Jianye
收藏
  |  
浏览/下载:14/0
  |  
提交时间:2019/11/19
Clonal haplotype
Sequencing data analysis
Computational pipeline
Cancer genomics
Haplotype phasing
An Integrated Framework for Identifying Mutated Driver Pathway and Cancer Progression
期刊论文
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 卷号: Vol.16 No.2, 页码: 455-464
作者:
Wei Zhang
;
Shu-Lin Wang
收藏
  |  
浏览/下载:120/0
  |  
提交时间:2019/12/13
Cancer
Uncertainty
Bayes methods
Evolution (biology)
Computational modeling
Indexes
Genomics
Driver pathway
cancer progression
somatic mutation
discrete differential evolution
Bayesian network
An Integrated Framework for Identifying Mutated Driver Pathway and Cancer Progression
期刊论文
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 卷号: Vol.16 No.2, 页码: 455-464
作者:
Zhang, W
;
Wang, SL
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2019/12/13
Cancer
Uncertainty
Bayes Methods
Evolution Biology
Computational Modeling
Indexes
Genomics
Driver Pathway
Cancer Progression
Somatic Mutation
Discrete Differential Evolution
Bayesian Network
Prediction of Driver Modules via Balancing Exclusive Coverages of Mutations in Cancer Samples
期刊论文
ADVANCED SCIENCE, 2019, 卷号: 6, 期号: 4
作者:
Gao, Bo
;
Zhao, Yue
;
Li, Yang
;
Liu, Juntao
;
Wang, Lushan
收藏
  |  
浏览/下载:12/0
  |  
提交时间:2019/12/11
cancer genomics
coverage
driver modules
exclusivity
signaling
networks
Dysregulation, functional implications, and prognostic ability of the circadian clock across cancers.
期刊论文
Cancer medicine, 2019
作者:
Zekun Liu
;
Kai Yu
;
Jian Zheng
;
Huan Lin
;
Qi Zhao
收藏
  |  
浏览/下载:16/0
  |  
提交时间:2019/12/17
cancer biology
genomics
immunology
survival
The Discovery of Mutated Driver Pathways in Cancer: Models and Algorithms
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2018, 卷号: 15, 期号: 3, 页码: 988-998
作者:
Zhang, Junhua
;
Zhang, Shihua
收藏
  |  
浏览/下载:19/0
  |  
提交时间:2018/07/30
Bioinformatics
cancer genomics
driver gene
driver pathway
mutual exclusivity
co-occurring mutation
Correcting genomic deletion calls with complex boundaries from next generation sequencing data
会议论文
作者:
Zhao, Zhongmeng
;
Tian, Zewen
;
Geng, Yu
;
He, Siyu
;
Zhang, Xuanping
收藏
  |  
浏览/下载:22/0
  |  
提交时间:2019/11/19
next generation sequencing data analysis
tumor clonity
structural variant detection
genomic deletion with complex boundaries
Cancer genomics
TNSim: A Tumor Sequencing Data Simulator for Incorporating Clonality Information
会议论文
作者:
Geng, Yu
;
Zhao, Zhongmeng
;
Xu, Mingzhe
;
Zhang, Xuanping
;
Xiao, Xiao
收藏
  |  
浏览/下载:17/0
  |  
提交时间:2019/11/19
Cancer genomics
Cancer sequencing data
Clonal structure
Data simulators
Effective analysis
Next-generation sequencing
Single nucleotides
Statistical features
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