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新疆理化技术研究所 [16]
厦门大学 [8]
数学与系统科学研究院 [7]
北京大学 [5]
中国科学院大学 [4]
清华大学 [3]
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DeepDigest: Prediction of Protein Proteolytic Digestion with Deep Learning
期刊论文
ANALYTICAL CHEMISTRY, 2021, 卷号: 93, 期号: 15, 页码: 6094-6103
作者:
Yang, Jinghan
;
Gao, Zhiqiang
;
Ren, Xiuhan
;
Sheng, Jie
;
Xu, Ping
收藏
  |  
浏览/下载:11/0
  |  
提交时间:2021/10/26
Prediction of Drug-Target Interactions From Multi-Molecular Network Based on Deep Walk Embedding Model
期刊论文
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 2020, 卷号: 8, 期号: 6, 页码: 1-9
作者:
Chen, ZH (Chen, Zhan-Heng)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1,2 ]
;
Guo, ZH (Guo, Zhen-Hao)[ 1,2 ]
;
Yi, HC (Yi, Hai-Cheng)[ 1,2 ]
;
Luo, GX (Luo, Gong-Xu)[ 1,2 ]
收藏
  |  
浏览/下载:33/0
  |  
提交时间:2020/09/09
drug-target interactions
molecular association network
attribute feature
behavior feature
random forest
Using Weighted Extreme Learning Machine Combined With Scale-Invariant Feature Transform to Predict Protein-Protein Interactions From Protein Evolutionary Information
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 5, 页码: 1546-1554
作者:
Li, JQ (Li, Jianqiang)[ 1 ]
;
Shi, XF (Shi, Xiaofeng)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Yi, HC (Yi, Hai-Cheng)[ 2 ]
;
Chen, ZZ (Chen, Zhuangzhuang)[ 1 ]
收藏
  |  
浏览/下载:29/0
  |  
提交时间:2020/10/23
Protein-protein interactions
scale-invariant feature transform
weighted extreme learning machine
Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
期刊论文
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 卷号: 17, 期号: 3, 页码: 972-980
作者:
Wang, L (Wang, Lei)[ 1 ]
;
You, ZH (You, Zhu-Hong)[ 2 ]
;
Huang, DS (Huang, De-Shuang)[ 3 ]
;
Zhou, FF (Zhou, Fengfeng)[ 4,5 ]
收藏
  |  
浏览/下载:27/0
  |  
提交时间:2020/12/09
Proteins
RNA
Convolution
Neural networks
Benchmark testing
Feature extraction
Sparse matrices
Convolution neural network
extreme learning machine
RNA-protein interactions
sequence
BGFE: A Deep Learning Model for ncRNA-Protein Interaction Predictions Based on Improved Sequence Information
期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 卷号: 20, 期号: 4, 页码: 1-14
作者:
Zhan, ZH (Zhan, Zhao-Hui)[ 1 ]
;
Jia, LN (Jia, Li-Na)[ 2 ]
;
Zhou, Y (Zhou, Yong)[ 1 ]
;
Li, LP (Li, Li-Ping)[ 3 ]
;
Yi, HC (Yi, Hai-Cheng)[ 3 ]
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  |  
浏览/下载:77/0
  |  
提交时间:2019/05/16
ncRNA-protein interaction
bi-gram
position specific scoring matrix
k-mers
deep learning
A High Efficient Biological Language Model for Predicting Protein-Protein Interactions
期刊论文
CELLS, 2019, 卷号: 8, 期号: 2, 页码: 1-12
作者:
Wang, YB (Wang, Yanbin)[ 1,2 ]
;
You, ZH (You, Zhu-Hong)[ 1 ]
;
Yang, S (Yang, Shan)[ 1,2 ]
;
Li, X (Li, Xiao)[ 1 ]
;
Jiang, TH (Jiang, Tong-Hai)[ 1 ]
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  |  
浏览/下载:118/0
  |  
提交时间:2019/05/16
protein-protein interactions
bio-language processing
sentencepiece
convolution neural network
unigram language model
DCGR: Feature extractions from protein sequences based on CGR via remodeling multiple information (Open Access)
期刊论文
BMC Bioinformatics, 2019, 卷号: 20, 期号: 1
作者:
Mu, Zengchao
;
Yu, Ting
;
Qi, Enfeng
;
Liu, Juntao
;
Li, Guojun
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2019/12/11
DCGR: feature extractions from protein sequences based on CGR via remodeling multiple information
期刊论文
BMC BIOINFORMATICS, 2019, 卷号: 20
作者:
Mu, Zengchao
;
Yu, Ting
;
Qi, Enfeng
;
Liu, Juntao
;
Li, Guojun
收藏
  |  
浏览/下载:7/0
  |  
提交时间:2019/12/11
Protein feature extraction
CGR curve
Physicochemical property
Algorithm
Prediction of subcellular location of apoptosis proteins by incorporating PsePSSM and DCCA coefficient based on LFDA dimensionality reduction
期刊论文
BMC Genomics, 2018, 卷号: 19, 期号: 1
作者:
Yu,Bin
;
Li,Shan
;
Qiu,Wenying
;
Wang,Minghui
;
Du,Junwei
收藏
  |  
浏览/下载:47/0
  |  
提交时间:2018/07/30
Apoptosis proteins
Subcellular localization
Pseudo-position specific scoring matrix
Detrended cross-correlation analysis coefficient
Local fisher discriminant analysis
Support vector machine
An Ensemble Classifier with Random Projection for Predicting Protein-Protein Interactions Using Sequence and Evolutionary Information
期刊论文
APPLIED SCIENCES-BASEL, 2018, 卷号: 8, 期号: 1, 页码: 1-15
作者:
Song, XY (Song, Xiao-Yu)
;
Chen, ZH (Chen, Zhan-Heng)
;
Sun, XY (Sun, Xiang-Yang)
;
You, ZH (You, Zhu-Hong)
;
Li, LP (Li, Li-Ping)
收藏
  |  
浏览/下载:53/0
  |  
提交时间:2018/03/05
Protein-protein Interactions
Position-specific Scoring Matrix
Random Projection Ensemble Classifier
Support Vector Machine
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