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科研机构
数学与系统科学研究... [12]
内容类型
期刊论文 [12]
发表日期
2021 [12]
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Network diffusion for scalable embedding of massive single-cell ATAC-seq data
期刊论文
SCIENCE BULLETIN, 2021, 卷号: 66, 期号: 22, 页码: 2271-2276
作者:
Dong, Kangning
;
Zhang, Shihua
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浏览/下载:5/0
  |  
提交时间:2022/04/02
Approximate distance correlation for selecting highly interrelated genes across datasets
期刊论文
PLOS COMPUTATIONAL BIOLOGY, 2021, 卷号: 17, 期号: 11, 页码: 18
作者:
Shen, Qunlun
;
Zhang, Shihua
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  |  
浏览/下载:15/0
  |  
提交时间:2022/04/02
Robust Bayesian matrix decomposition with mixture of Gaussian noise
期刊论文
NEUROCOMPUTING, 2021, 卷号: 449, 页码: 108-116
作者:
Wang, Haohui
;
Zhang, Chihao
;
Zhang, Shihua
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  |  
浏览/下载:22/0
  |  
提交时间:2021/10/26
Bayesian method
Matrix decomposition
Maximum a posterior
Mixture of Gaussians
Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data
期刊论文
BRIEFINGS IN BIOINFORMATICS, 2021, 卷号: 22, 期号: 3, 页码: 15
作者:
Dong, Kangning
;
Zhang, Shihua
收藏
  |  
浏览/下载:3/0
  |  
提交时间:2022/04/02
cis-regulatory interaction networks
single-cell ATAC-seq
Gaussian graphical LASSO
Bayesian Joint Matrix Decomposition for Data Integration with Heterogeneous Noise
期刊论文
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2021, 卷号: 43, 期号: 4, 页码: 1184-1196
作者:
Zhang, Chihao
;
Zhang, Shihua
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  |  
浏览/下载:100/0
  |  
提交时间:2021/04/26
Matrix decomposition
Bayes methods
Data integration
Inference algorithms
Data models
Data mining
Gaussian distribution
Bayesian methods
matrix decomposition
data integration
variational Bayesian inference
maximum a posterior
Towards understanding residual and dilated dense neural networks via convolutional sparse coding
期刊论文
NATIONAL SCIENCE REVIEW, 2021, 卷号: 8, 期号: 3, 页码: 13
作者:
Zhang, Zhiyang
;
Zhang, Shihua
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  |  
浏览/下载:13/0
  |  
提交时间:2021/10/26
convolutional neural network
convolutional sparse coding
residual neural network
mixed-scale dense neural network
dilated convolution
dense connection
A Novel Sparse Graph-Regularized Singular Value Decomposition Model and Its Application to Genomic Data Analysis
期刊论文
IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS, 2021, 页码: 15
作者:
Min, Wenwen
;
Wan, Xiang
;
Chang, Tsung-Hui
;
Zhang, Shihua
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  |  
浏览/下载:8/0
  |  
提交时间:2022/04/02
Gene expression
Biology
Biological system modeling
Principal component analysis
Mathematical model
Data models
Big Data
Absolute-valued graph regularization
graph regularization
sparse learning
structured sparse singular value decomposition (SVD)
3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis
期刊论文
CELL, 2021, 卷号: 184, 期号: 3, 页码: 723-+
作者:
Luo, Xin
;
Liu, Yuting
;
Dang, Dachang
;
Hu, Ting
;
Hou, Yingping
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  |  
浏览/下载:48/0
  |  
提交时间:2021/06/01
A kernel non-negative matrix factorization framework for single cell clustering
期刊论文
APPLIED MATHEMATICAL MODELLING, 2021, 卷号: 90, 页码: 875-888
作者:
Jiang, Hao
;
Yi, Ming
;
Zhang, Shihua
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  |  
浏览/下载:9/0
  |  
提交时间:2021/04/26
Single cell RNA-sequencing
Kernel non-negative matrix factorization
Cellular heterogeneity
Group-Sparse SVD Models via L-1- and L-0-norm Penalties and their Applications in Biological Data
期刊论文
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2021, 卷号: 33, 期号: 2, 页码: 536-550
作者:
Min, Wenwen
;
Liu, Juan
;
Zhang, Shihua
收藏
  |  
浏览/下载:36/0
  |  
提交时间:2021/04/26
Sparse SVD
low-rank matrix decomposition
group-sparse penalty
overlapping group-sparse penalty
coordinate descent method
alternating direction method of multipliers (ADMM)
data mining
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