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学科主题:Biochemistry & Molecular Biology
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ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
期刊论文
JOURNAL OF COMPUTATIONAL BIOLOGY, 2022
作者:
Kong, Lupeng
;
Ju, Fusong
;
Zheng, Wei-mou
;
Zhu, Jianwei
;
Sun, Shiwei
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2023/01/16
SERVER
Seq-SetNet: directly exploiting multiple sequence alignment for protein secondary structure prediction
期刊论文
BIOINFORMATICS, 2022, 卷号: 38, 期号: 4, 页码: 990-996
作者:
Ju, Fusong
;
Zhu, Jianwei
;
Zhang, Qi
;
Wei, Guozheng
;
Sun, Shiwei
收藏
  |  
浏览/下载:13/0
  |  
提交时间:2023/01/16
RECOGNITION
FRAGMENTS
FOLD
Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 卷号: 86, 页码: 136-151
作者:
Wang, YT
;
Zhang, CX
;
Mortuza, SM
;
He, BJ
;
Zhang, Y
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  |  
浏览/下载:88/0
  |  
提交时间:2018/12/27
PROTEIN-STRUCTURE PREDICTION
RESIDUE CONTACTS
SEQUENCE
ALIGNMENTS
ACCURACY
NETWORKS
ROLL
Comparing NMR and X-ray protein structure: Lindemann-like parameters and NMR disorder
期刊论文
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2018, 卷号: 36, 期号: 9, 页码: 2331-2341
作者:
Sussman, JL
;
Faraggi, E
;
Dunker, AK
;
Kloczkowski, A
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  |  
浏览/下载:89/0
  |  
提交时间:2018/12/27
BACKBONE TORSION ANGLES
MAJOR URINARY PROTEIN
INTRINSIC DISORDER
STRUCTURE PREDICTION
SECONDARY STRUCTURE
CRYSTAL-STRUCTURE
DYNAMICS
DIFFRACTION
CRYSTALLOGRAPHY
RECOGNITION
Improving prediction of burial state of residues by exploiting correlation among residues
期刊论文
BMC BIOINFORMATICS, 2017, 卷号: 18, 页码: 70
作者:
Gong, HE
;
Zhang, HC
;
Zhu, JW
;
Wang, C
;
Sun, SW
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浏览/下载:31/0
  |  
提交时间:2017/12/21
Protein Structure
Burial States Of Residue
Conditional Random Field
Residue Correlation
Sweet spot matching: A thin-layer chromatography-based countercurrent solvent system selection strategy
期刊论文
JOURNAL OF CHROMATOGRAPHY A, 2017, 卷号: 1504, 期号: x, 页码: 46-100
Liu, Yang
;
Friesen, J. Brent
;
Grzelak, Edyta M.
;
Fan, Qingfei
;
Tang, Ting
;
Duric, Kemal
;
Jaki, Birgit U.
;
McAlpine, James B.
;
Franzblaue, Scott G.
;
Chen, Shao-Nong
;
Pauli, Guido F.
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浏览/下载:30/0
  |  
提交时间:2017/07/18
MQAPsingle: A quasi single-model approach for estimation of the quality of individual protein structure models
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2016, 卷号: 84, 期号: 8, 页码: 1021-1028
作者:
Pawlowski, M
;
Kozlowski, L
;
Kloczkowski, A
;
Kloczkowski, A (reprint author), Nationwide Childrens Hosp, Res Inst, Battelle Ctr Math Med, 700 Childrens Dr, Columbus, OH 43205 USA.
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浏览/下载:83/0
  |  
提交时间:2017/10/13
Model Quality Assessment
Protein Structure
Protein Prediction
Mqap
Single-model Mqap
Model Correctness
Casp10
MQAPsingle: A quasi single-model approach for estimation of the quality of individual protein structure models
期刊论文
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2016, 卷号: 84, 期号: 8, 页码: 1021-1028
作者:
Pawlowski, M
;
Kozlowski, L
;
Kloczkowski, A
收藏
  |  
浏览/下载:47/0
  |  
提交时间:2019/04/08
model quality assessment
STRUCTURE PREDICTION
protein structure
FOLD RECOGNITION
protein prediction
NEURAL-NETWORKS
MQAP
SECONDARY STRUCTURE
single-model MQAP
META-SERVER
model correctness
CASP8
CASP10
ALIGNMENTS
CONSENSUS
PROFILES
PCONS
Prediction and analysis of cell-penetrating peptides using pseudo-amino acid composition and random forest models
期刊论文
AMINO ACIDS, 2015, 卷号: 47, 期号: 7, 页码: 1485-1493
作者:
Chen, L
;
Chu, C
;
Huang, T
;
Kong, XY
;
Cai, YD
收藏
  |  
浏览/下载:31/0
  |  
提交时间:2015/07/22
Cell-penetrating peptide
Pseudo-amino acid composition
Minimum redundancy maximum relevance
Incremental feature selection
Random forest
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