Comparative mapping for bighead carp (Aristichthys nobilis) against model and non-model fishes provides insights into the genomic evolution of cyprinids

CORC > 水生生物研究所 > 鱼类生物学及渔业生物技术研究中心 > 期刊论文

	Comparative mapping for bighead carp (Aristichthys nobilis) against model and non-model fishes provides insights into the genomic evolution of cyprinids
	Zhu, Chuankun 1,2; Tong, Jingou 1; Yu, Xiaomu 1; Guo, Wenjie 1
刊名	MOLECULAR GENETICS AND GENOMICS
	2015-08-01
卷号	290 期号:4 页码:1313-1326
关键词	Comparative genome mapping Bighead carp (Aristichthys nobilis) Cyprinids Syntenic region Genomic evolution
ISSN号	1617-4615
英文摘要	Comparative mapping provides an efficient method to connect genomes of non-model and model fishes. In this study, we used flanking sequences of the 659 microsatellites on a genetic map of bighead carp (Aristichthys nobilis) to comprehensively study syntenic relationships between bighead carp and nine model and non-model fishes. Of the five model and two food fishes with whole genome data, Cyprinus carpio showed the highest rate of positive BLAST hits (95.3 %) with bighead carp map, followed by Danio rerio (70.9 %), Oreochromis niloticus (21.7 %), Tetraodon nigroviridis (6.4 %), Gasterosteus aculeatus (5.2 %), Oryzias latipes (4.7 %) and Fugu rubripes (3.5 %). Chromosomal syntenic analyses showed that inversion was the basic chromosomal rearrangement during genomic evolution of cyprinids, and the extent of inversions and translocations was found to be positively correlated with evolutionary relationships among fishes studied. Among the five investigated cyprinids, linkage groups (LGs) of bighead carp, Hypophthalmichthys molitrix and Ctenopharyngodon idella exhibited a one-to-one relationship. Besides, LG 9 of bighead carp and homologous LGs of silver carp and grass carp all corresponded to the chromosomes 10 and 22 of zebrafish, suggesting that chromosomal fission may have occurred in the ancestor of zebrafish. On the other hand, LGs of bighead carp and common carp showed an approximate one-to-two relationship with extensive translocations, confirming the occurrence of a 4th whole genome duplication in common carp. This study provides insights into the understanding of genome evolution among cyprinids and would aid in transferring positional and functional information of genes from model fish like zebrafish to non-model fish like bighead carp.
WOS标题词	Science & Technology ; Life Sciences & Biomedicine
类目[WOS]	Biochemistry & Molecular Biology ; Genetics & Heredity
研究领域[WOS]	Biochemistry & Molecular Biology ; Genetics & Heredity
关键词[WOS]	GENETIC-LINKAGE MAP ; QUANTITATIVE TRAIT LOCI ; TETRAODON-NIGROVIRIDIS ; VERTEBRATE CHROMOSOMES ; MICROSATELLITE MARKERS ; PHYSICAL MAP ; ZEBRAFISH ; DUPLICATION ; REVEALS ; L.
收录类别	SCI
语种	英语
WOS记录号	WOS:000358246000009
内容类型	期刊论文
源URL	[http://ir.ihb.ac.cn/handle/342005/25956]
专题	水生生物研究所_鱼类生物学及渔业生物技术研究中心_期刊论文
作者单位	1.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China 2.Huaiyin Normal Univ, Jiangsu Engn Lab Breeding Special Aquat Organisms, Huaian 223300, Peoples R China
推荐引用方式 GB/T 7714	Zhu, Chuankun,Tong, Jingou,Yu, Xiaomu,et al. Comparative mapping for bighead carp (Aristichthys nobilis) against model and non-model fishes provides insights into the genomic evolution of cyprinids[J]. MOLECULAR GENETICS AND GENOMICS,2015,290(4):1313-1326.
APA	Zhu, Chuankun,Tong, Jingou,Yu, Xiaomu,&Guo, Wenjie.(2015).Comparative mapping for bighead carp (Aristichthys nobilis) against model and non-model fishes provides insights into the genomic evolution of cyprinids.MOLECULAR GENETICS AND GENOMICS,290(4),1313-1326.
MLA	Zhu, Chuankun,et al."Comparative mapping for bighead carp (Aristichthys nobilis) against model and non-model fishes provides insights into the genomic evolution of cyprinids".MOLECULAR GENETICS AND GENOMICS 290.4(2015):1313-1326.