MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes

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	MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes
	Sun, Zheng 1,2; Cheng, Yuanzhi 2; Zhang, Junbin 1
刊名	EVOLUTIONARY BIOINFORMATICS
	2015
卷号	11
关键词	mitochondrial genome evolution Perl script phylogeny
英文摘要	As a result of the development of rapid and efficient sequencing technologies, complete sequences of numerous mitochondrial genomes are now available. Mitochondrial genomes have been widely used to evaluate relationships between species in several fields, including evolutionary and population genetics, as well as in forensic identification and in the study of mitochondrial diseases in humans. However, the creation of mitochondrial genomes is extremely time consuming. In this paper, we present a new tool, MITOSCISSOR, which is a rapid method for parsing and formatting dozens of complete mitochondrial genome sequences. With the aid of MITOSCISSOR, complete mitochondrial genome sequences of 103 species from Tetraodontiformes (a difficult-to-classify order of fish) were easily parsed and formatted. It typically takes several days to produce similar results when relying upon manual editing. This tool could open the .gb file of Genbank directly and help us to use existing mitogenomic data. In the present study, we established the first clear and robust molecular phylogeny of 103 tetraodontiform fishes, a goal that has long eluded ichthyologists. MITOSCISSOR greatly increases the efficiency with which DNA data files can be parsed and annotated, and thus has the potential to greatly facilitate evolutionary analysis using mitogenomic data. This software is freely available for noncommercial users at http://www.filedropper.com/mitoscissor.
收录类别	SCI
语种	英语
WOS记录号	WOS:000356093800001
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/33068]
专题	海洋研究所_实验海洋生物学重点实验室
作者单位	1.Shanghai Ocean Univ, Coll Fisheries & Life Sci, Shanghai, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China
推荐引用方式 GB/T 7714	Sun, Zheng,Cheng, Yuanzhi,Zhang, Junbin. MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes[J]. EVOLUTIONARY BIOINFORMATICS,2015,11.
APA	Sun, Zheng,Cheng, Yuanzhi,&Zhang, Junbin.(2015).MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes.EVOLUTIONARY BIOINFORMATICS,11.
MLA	Sun, Zheng,et al."MITOSCISSOR: A Useful Tool for Auto-Assembly of Mitogenomic Datasets in the Evolutionary Analysis of Fishes".EVOLUTIONARY BIOINFORMATICS 11(2015).