Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant

	Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant
	Wu, PZ ; Zhou, CP ; Cheng, SF ; Wu, ZY ; Lu, WJ ; Han, JL ; Chen, YB ; Chen, Y ; Ni, PX ; Wang, Y ; Xu, X ; Huang, Y ; Song, C ; Wang, ZW ; Shi, N ; Zhang, XD ; Fang, XH ; Yang, Q ; Jiang, HW ; Chen, YP ; Li, MR ; Wang, Y ; Chen, F ; Wang, J ; Wu, GJ
刊名	PLANT JOURNAL
	2015
卷号	81 期号:5 页码:810-821
关键词	physic nut Jatropha curcas L genome sequence linkage map genome evolution gene family oil biosynthesis starch biosynthesis toxicant synthesis
ISSN号	0960-7412
中文摘要	The family Euphorbiaceae includes some of the most efficient biomass accumulators. Whole genome sequencing and the development of genetic maps of these species are important components in molecular breeding and genetic improvement. Here we report the draft genome of physic nut (Jatropha curcas L.), a biodiesel plant. The assembled genome has a total length of 320.5Mbp and contains 27172 putative protein-coding genes. We established a linkage map containing 1208 markers and anchored the genome assembly (81.7%) to this map to produce 11 pseudochromosomes. After gene family clustering, 15268 families were identified, of which 13887 existed in the castor bean genome. Analysis of the genome highlighted specific expansion and contraction of a number of gene families during the evolution of this species, including the ribosome-inactivating proteins and oil biosynthesis pathway enzymes. The genomic sequence and linkage map provide a valuable resource not only for fundamental and applied research on physic nut but also for evolutionary and comparative genomics analysis, particularly in the Euphorbiaceae. Significance StatementThe genomic sequence and linkage map of physic nut provide a valuable resource not only for the fundamental and applied research on physic nut but also for evolutionary and comparative genomics analysis, particularly in the Euphorbiaceae.
原文出处	10.1111/tpj.12761
公开日期	2015-04-28
内容类型	期刊论文
源URL	[http://ir.xtbg.org.cn/handle/353005/8686]
专题	西双版纳热带植物园_其他
推荐引用方式 GB/T 7714	Wu, PZ,Zhou, CP,Cheng, SF,et al. Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant[J]. PLANT JOURNAL,2015,81(5):810-821.
APA	Wu, PZ.,Zhou, CP.,Cheng, SF.,Wu, ZY.,Lu, WJ.,...&Wu, GJ.(2015).Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant.PLANT JOURNAL,81(5),810-821.
MLA	Wu, PZ,et al."Integrated genome sequence and linkage map of physic nut (Jatropha curcas L.), a biodiesel plant".PLANT JOURNAL 81.5(2015):810-821.