Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)

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	Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)
	Tong, Yan 1,2,3; Wu, Chun-Yan 2,3; Gao, Li-Zhi2
刊名	BIOCHEMICAL SYSTEMATICS AND ECOLOGY
	2013-10-01
卷号	50 页码:207-211
关键词	Camellia reticulata Theaceae Polymorphisms Population genetics cpSSR Chloroplast microsatellite
ISSN号	0305-1978
通讯作者	Gao,LZ (reprint author),Chinese Acad Sci,Kunming Inst Bot,Plant Germplasm & Genom Ctr,Germplasm Bank Wild Species Southwest China,Kunming 650201,Peoples R China.,Lgao@mail.kib.ac.cn
英文摘要	This study characterized chloroplast microsatellite markers for Camellia reticulata, a famous ornamental and edible economic tree species only distributed in Southwestern China. Thirty-two chloroplast microsatellite markers were originally annotated in the whole chloroplast genome of Camellia taliensis, ten polymorphic microsatellite markers were tested in 96 individuals from four natural populations of C reticulata. Alleles numbered from two to four, and average value of Shannon's Information index, Nei's gene diversity, total genetic diversity, genetic diversity within populations, gene differentiation coefficient and gene flow index were 0.408, 0.225, 0.217, 0.102, 0.530 and 0.443, respectively. Our results showed high genetic differentiation and limited gene flow among the studied populations, which may be explained by recent fragmentation of the remnant populations due to human destruction and disturbance of natural habitats of the species. The identified cpSSR markers will be useful for the future studies on population genetics, conservation biology and phylogeography of C reticulata. (C) 2013 Elsevier Ltd. All rights reserved.
学科主题	Biochemistry & Molecular Biology ; Environmental Sciences & Ecology ; Evolutionary Biology
WOS标题词	Science & Technology ; Life Sciences & Biomedicine
类目[WOS]	Biochemistry & Molecular Biology ; Ecology ; Evolutionary Biology
研究领域[WOS]	Biochemistry & Molecular Biology ; Environmental Sciences & Ecology ; Evolutionary Biology
关键词[WOS]	TEA PLANT ; SINENSIS ; IDENTIFICATION ; AMPLIFICATION ; MARKERS
收录类别	SCI
资助信息	National Science Foundation of China [U0936603];Natural Science Foundation of Yunnan Province [2008CC016];Hundreds Oversea Talents Program of Yunnan Province;Top Talent Program of Yunnan Province [20080A009];Chinese Academy of Sciences (CAS);Kunming Institute of Botany, CAS [672705232515, 51O602511121]
语种	英语
WOS记录号	WOS:000325597600031
公开日期	2014-01-13
内容类型	期刊论文
源URL	[http://ir.kib.ac.cn/handle/151853/17443]
专题	昆明植物研究所_中国西南野生生物种质资源库
作者单位	1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650201, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Plant Germplasm & Genom Ctr, Germplasm Bank Wild Species Southwest China, Kunming 650201, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100039, Peoples R China
推荐引用方式 GB/T 7714	Tong, Yan,Wu, Chun-Yan,Gao, Li-Zhi. Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)[J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY,2013,50:207-211.
APA	Tong, Yan,Wu, Chun-Yan,&Gao, Li-Zhi.(2013).Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae).BIOCHEMICAL SYSTEMATICS AND ECOLOGY,50,207-211.
MLA	Tong, Yan,et al."Characterization of chloroplast microsatellite loci from whole chloroplast genome of Camellia taliensis and their utilization for evaluating genetic diversity of Camellia reticulata (Theaceae)".BIOCHEMICAL SYSTEMATICS AND ECOLOGY 50(2013):207-211.