Chromosome-level assembly of Gymnocypris eckloni genome

	Chromosome-level assembly of Gymnocypris eckloni genome
	Wang, FY; Wang, LH; Liu, D; Gao, Q; Nie, MM; Zhu, SH; Chao, Y; Yang, CJ; Zhang, CF; Yi, RG
刊名	SCIENTIFIC DATA
	2022
卷号	9 期号:1
英文摘要	Gymnocypris eckloni is widely distributed in isolated lakes and the upper reaches of the Yellow River and play significant roles in the trophic web of freshwater communities. In this study, we generated a chromosome-level genome of G. eckloni using PacBio, Illumina and Hi-C sequencing data. The genome consists of 23 pseudo-chromosomes that contain 918.68 Mb of sequence, with a scaffold N50 length of 43.54 Mb. In total, 23,157 genes were annotated, representing 94.80% of the total predicted protein-coding genes. The phylogenetic analysis showed that G. eckloni was most closely related to C. carpio with an estimated divergence time of similar to 34.8 million years ago. For G. eckloni, we identified a high-quality genome at the chromosome level. This genome will serve as a valuable genomic resource for future research on the evolution and ecology of the schizothoracine fish in the Qinghai-Tibetan Plateau.
内容类型	期刊论文
源URL	[http://210.75.249.4/handle/363003/61138]
专题	西北高原生物研究所_中国科学院西北高原生物研究所
推荐引用方式 GB/T 7714	Wang, FY,Wang, LH,Liu, D,et al. Chromosome-level assembly of Gymnocypris eckloni genome[J]. SCIENTIFIC DATA,2022,9(1).
APA	Wang, FY.,Wang, LH.,Liu, D.,Gao, Q.,Nie, MM.,...&Qi, DL.(2022).Chromosome-level assembly of Gymnocypris eckloni genome.SCIENTIFIC DATA,9(1).
MLA	Wang, FY,et al."Chromosome-level assembly of Gymnocypris eckloni genome".SCIENTIFIC DATA 9.1(2022).