The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species

doi:10.1104/pp.17.00029

CORC > 植物研究所 > 中国科学院植物研究所 > 植被与环境变化国家重点实验室

	The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species
	Xue, Zhi-Qing ; Xue, Jian-Hua ; Victorovna, Kryukova Maria 2; Ma, Ke-Ping
刊名	AQUATIC BOTANY
	2017
卷号	143 页码:54-62
关键词	Trapa maximowiczii Myrtales Chloroplast Whole genome sequencing Phylogeny
ISSN号	0304-3770
DOI	10.1104/pp.17.00029
文献子类	Article
英文摘要	Trapaceae is an aquatic plant family widely distributed in and around Asia, Europe, and Africa. The fruits, while rich in starch and protein, also have edible and medicinal value. The first complete chloroplast genome in Trapaceae (Trapa maximowiczii Korsh.) has been determined. The genome size is 155,577 bp, which includes two inverted repeats (IR) of 24,388 bp, one large single copy (LSC) of 88,528 bp, and one small single copy (SSC) of 18,273 bp. The whole GC content is 36.4%. There are 111 genes in this genome, and 17 are duplicated in the IR. Fourteen genes have one intron, and rps12 and clpP, have two introns. The SSR and repeat analysis revealed 61 SSR5, 22 repeat units, and 16 palindromic structures in this chloroplast genome. In a comparative analysis with five species, the detailed boundaries were compared between IR and LSC/SSC that are supposed to be closely related to T. maximowiczii and Lagerstroemia fauriei; gene infA has been lost only in T. maximowiczii and L. fauriei. The mVISTA analysis revealed several variable regions in the Myrtales genome including loci ycf1, ycf2, accD and rpl32-trnL, which can be useful in phylogenetic studies. The phylogenetic position of T. maximowiczii in the whole genome, LSC, SSC, and IR regions has been confirmed using 8 taxa from Myrtales, which is in agreement with other reports that place T. maximowiczii in the same Glade as that of Lythraceae. These data represent valuable genetic resources for future research on Trapa population genetics.
学科主题	Plant Sciences
电子版国际标准刊号	1879-1522
出版地	AMSTERDAM
WOS关键词	NONPHOTOSYNTHETIC PARASITIC PLANT ; GENOME SEQUENCE ; PLASTID GENOME ; EVOLUTION ; GENE ; ORGANIZATION ; LYTHRACEAE ; PATTERNS ; NUCLEUS ; PHYLOGENY
语种	英语
出版者	ELSEVIER SCIENCE BV
WOS记录号	WOS:000402057200009
资助机构	National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [41671043, 31270262] ; Special Foundation of National Science and Technology Basic Research [2013FY112300] ; Special Foundation of Russia of the International Cooperation Bureau in Chinese Academy of Sciences ; Special Foundation of Ukraine of the International Cooperation Bureau in Chinese Academy of Sciences ; Special Foundation of Belarus of the International Cooperation Bureau in Chinese Academy of Sciences
内容类型	期刊论文
源URL	[http://ir.ibcas.ac.cn/handle/2S10CLM1/22188]
专题	植被与环境变化国家重点实验室
作者单位	1.Chinese Acad Sci, Inst Bot, State Key Lab Vegetat & Environm Change, Beijing 100093, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Russian Acad Sci, Far East Branch, Inst Water & Ecol Problems, Khabarovsk 680000, Russia
推荐引用方式 GB/T 7714	Xue, Zhi-Qing,Xue, Jian-Hua,Victorovna, Kryukova Maria,et al. The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species[J]. AQUATIC BOTANY,2017,143:54-62.
APA	Xue, Zhi-Qing,Xue, Jian-Hua,Victorovna, Kryukova Maria,&Ma, Ke-Ping.(2017).The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species.AQUATIC BOTANY,143,54-62.
MLA	Xue, Zhi-Qing,et al."The complete chloroplast DNA sequence of Trapa maximowiczii Korsh. (Trapaceae), and comparative analysis with other Myrtales species".AQUATIC BOTANY 143(2017):54-62.