The complete mitochondrial genome of the largest amphipod, Alicella gigantea: Insight into its phylogenetic relationships and deep sea adaptive characters
Li, Jun-yuan; Song, Zeng-lei; Yan, Guo-yong; He, Li-sheng
刊名INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
2019-12-01
卷号141期号:1页码:570-577
关键词Deepsea amphipods Alicella gigantea Mitochondrial genome
ISSN号0141-8130
DOI10.1016/j.ijbiomac.2019.09.050
英文摘要

Alicella gigantea (Alicelloidae) is a scavenger with the largest body size among amphipods. It is a participant in the foodweb of deepsea ecosystem and distributed with vast bathymetric and geographic ranges. In this study, the mitochondrial genome of A. gigantea was completely assembled and characterized. The complete sequence has a total length of 16,851 bp, comprising the usual eukaryotic components, with 13 protein-coding genes (PCGs), 2 ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and 2 noncoding control regions (CRs). The gene rearrangement and reverse nucleotide strand bias of its mitochondrial genome are similar to those observed in the deepsea amphipod Eurythenes maldoror (Eurytheneidae), but different from the characters of notice sp. MT-2017 (Dexaminoidea), an inhabitant of a deeper environment. Phylogenetic analysis indicates that A. gigantea occupies the basal branch of deepsea species--E. maldoror and Hirondellea gigas. This phylogeny supports the hypothesis that the evolution of hadal amphipods has undergone a transition from the abyssal depth. Compared to 41 available shallow water equivalents, the four accessible mitochondrial genomes from the deep sea, including the one produced in this study, show significantly fewer charged amino acids in the 13 PCGs, which suggests an adaption to the deepsea environment. (C) 2019 Elsevier B.V. All rights reserved.

资助项目National Key Research and Development Program of China[2018YFC0309804] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB06010103]
WOS关键词TRANSFER-RNA GENES ; CONTROL REGION ; CRUSTACEA ; ADAPTATION ; EVOLUTION ; PATTERNS ; TEMPERATURE ; EXPLORATION ; ANNOTATION ; MECHANISMS
WOS研究方向Biochemistry & Molecular Biology ; Chemistry ; Polymer Science
语种英语
出版者ELSEVIER
WOS记录号WOS:000506713000061
资助机构National Key Research and Development Program of China ; Strategic Priority Research Program of the Chinese Academy of Sciences
内容类型期刊论文
版本出版稿
源URL[http://ir.idsse.ac.cn/handle/183446/7404]  
专题深海科学研究部_深海生物学研究室_深海生物蛋白质组学及分子生物学研究组
通讯作者He, Li-sheng
作者单位Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Hainan, Peoples R China
推荐引用方式
GB/T 7714
Li, Jun-yuan,Song, Zeng-lei,Yan, Guo-yong,et al. The complete mitochondrial genome of the largest amphipod, Alicella gigantea: Insight into its phylogenetic relationships and deep sea adaptive characters[J]. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES,2019,141(1):570-577.
APA Li, Jun-yuan,Song, Zeng-lei,Yan, Guo-yong,&He, Li-sheng.(2019).The complete mitochondrial genome of the largest amphipod, Alicella gigantea: Insight into its phylogenetic relationships and deep sea adaptive characters.INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES,141(1),570-577.
MLA Li, Jun-yuan,et al."The complete mitochondrial genome of the largest amphipod, Alicella gigantea: Insight into its phylogenetic relationships and deep sea adaptive characters".INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES 141.1(2019):570-577.
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