Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus

doi:10.1038/s41597-020-0441-7

CORC > 海洋研究所 > 中国科学院海洋研究所 > 实验海洋生物学重点实验室

	Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus
	Liu, Xiao 7; Li, Chao 6; Chen, Min 1,2; Liu, Bo 6; Yan, Xiaojun ; Ning, Junhao 2; Ma, Bin 3; Liu, Guilong 3; Zhong, Zhaoshan 4; Jia, Yanglei
刊名	SCIENTIFIC DATA
	2020-03-23
卷号	7 期号:1 页码:8
DOI	10.1038/s41597-020-0441-7
通讯作者	Wang, Chunde(chundewang2007@163.com)
英文摘要	The two subspecies of Atlantic bay scallop (Argopecten irradians), A. i. irradians and A. i. concentricus, are economically important aquacultural species in northern and southern China. Here, we performed the whole-genome sequencing, assembly, and gene annotation and produced draft genomes for both subspecies. In total, 253.17 and 272.97 gigabases (Gb) of raw reads were generated from Illumina Hiseq and PacBio platforms for A. i. irradians and A. i. concentricus, respectively. Draft genomes of 835.7 Mb and 874.82 Mb were assembled for the two subspecies, accounting for 83.9% and 89.79% of the estimated sizes of their corresponding genomes, respectively. The contig N50 and scaffold N50 were 78.54 kb and 1.53 Mb for the A. i. irradians genome, and those for the A. i. concentricus genome were 63.73 kb and 1.25 Mb. Moreover, 26,777 and 25,979 protein-coding genes were predicted for A. i. irradians and A. i. concentricus, respectively. These valuable genome assemblies lay a solid foundation for future theoretical studies and provide guidance for practical scallop breeding. Measurement(s)DNA center dot genome center dot RNA center dot transcriptome center dot sequence_assembly center dot sequence feature annotationTechnology Type(s)DNA sequencing assay center dot RNA sequencing center dot sequence assembly process center dot sequence annotationSample Characteristic - OrganismArgopecten irradians Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.11961984
资助项目	National Natural Science Foundation of China[31572618] ; National Natural Science Foundation of China[31972791] ; National Natural Science Foundation of China[41676152] ; Earmarked Fund for Agriculture Seed Improvement Project of Shandong Province[2017LZGC009] ; Earmarked Fund for Shandong Modern Agro-Industry Technology Research System[SDAIT-14]
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	NATURE PUBLISHING GROUP
WOS记录号	WOS:000522091500002
内容类型	期刊论文
源URL	[http://ir.qdio.ac.cn/handle/337002/167074]
专题	海洋研究所_实验海洋生物学重点实验室
通讯作者	Wang, Chunde
作者单位	1.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China 2.Chinese Acad Sci, Ctr Ocean Mega Sci, Yantai 264003, Peoples R China 3.Yantai Spring Sea Aquaseeds Co Ltd, Yantai 264006, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 5.BGI Acad Marine Sci, Guangdong Prov Key Lab Mol Breeding Marine Econ A, Shenzhen Key Lab Marine Gen, BGI Marine, Shenzhen 518083, Peoples R China 6.Qingdao Agr Univ, Marine Sci & Engn Coll, Qingdao 266109, Peoples R China 7.Zhejiang Ocean Univ, Sch Fishery, Zhoushan 316022, Peoples R China
推荐引用方式 GB/T 7714	Liu, Xiao,Li, Chao,Chen, Min,et al. Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus[J]. SCIENTIFIC DATA,2020,7(1):8.
APA	Liu, Xiao.,Li, Chao.,Chen, Min.,Liu, Bo.,Yan, Xiaojun.,...&Wang, Chunde.(2020).Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus.SCIENTIFIC DATA,7(1),8.
MLA	Liu, Xiao,et al."Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus".SCIENTIFIC DATA 7.1(2020):8.