Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption

CORC > 昆明动物研究所 > 昆明动物研究所 > 遗传资源与进化国家重点实验室

	Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption
	Ren YD 1,2,3; Zhu YN 1,5; Wang Q 2; Xiang H1,4; Wang BY2; xiang_shine@ foxmail.com ; wangboyi1978@163.com
刊名	Scientific Reports
	2017
卷号	7 期号:X 页码:e3198
英文摘要	Pterospermum kingtungense C.Y.Wu ex Hsue is a typical tree species living in the relatively adverse limestone habitat. Due to its excellent wood quality and big size, it is an important timber resource which caused its endangered. We firstly provide the data resources by reporting an annotated transcriptome assembly. 203 million unique Illumina RNA-seq reads were produced with totally 50,333 transcripts, among which 48,778 transcripts were annotated. By a global comparison of homology between P. kingtungense and cacao, we identified 9,507 single copy orthologues and 990 P. kingtungense specific genes. GO enrichment analyses indicate that P. kingtungense specific genes are enriched in defense response, implying potential adaptation to limestone environment. As to cell compartment, the genes are enriched in thylakoid component. Consistently, KEGG enrichment indicates that genes are enriched in photosynthesis. In addition, we identified two genes under positive selection in P. kingtungense species. These results suggest that P. kingtungense have strong photosynthetic capacity, which related to vegetation growth. Our work provides the genomic resources of a limestone specific tree with economic importance to local society and suggests possible mechanism on its characteristics on the limestone adaption and excellent wood properties, which will be important for its conservation and sustainable utilization.
语种	英语
资助机构	This research was supported by a grant from the National Project (No. 31100248) of B.Y.W., a grant from the National Project (No. 31371286) and a grant of Yunnan Provincial Science and Technology Department (No.2015HB088) of H.X. ; This research was supported by a grant from the National Project (No. 31100248) of B.Y.W., a grant from the National Project (No. 31371286) and a grant of Yunnan Provincial Science and Technology Department (No.2015HB088) of H.X. ; This research was supported by a grant from the National Project (No. 31100248) of B.Y.W., a grant from the National Project (No. 31371286) and a grant of Yunnan Provincial Science and Technology Department (No.2015HB088) of H.X. ; This research was supported by a grant from the National Project (No. 31100248) of B.Y.W., a grant from the National Project (No. 31371286) and a grant of Yunnan Provincial Science and Technology Department (No.2015HB088) of H.X.
内容类型	期刊论文
源URL	[http://159.226.149.26:8080/handle/152453/11739]
专题	昆明动物研究所_遗传资源与进化国家重点实验室昆明动物研究所_基因起源组
通讯作者	xiang_shine@ foxmail.com; wangboyi1978@163.com
作者单位	1.State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China. 32 East Jiaochang Road, Kunming, Yunnan Province, 650223, China 2.Yunnan Forestry Technological College. No.1 JinDian, Kunming, Yunnan Province, 650224, China 3.University of Chinese Academy of Sciences, Beijing, 100049, China 4.Guangzhou Key Laboratory of Insect Development Regulation and Application Research, Institute of Insect Science and Technology & School of Life Sciences, South China Normal University, Guangzhou, 510631, China 5.5 Kunming University of Science and Technology, No.727, South Jingming Road, Chenggong District, Kunming, Yunnan Province, 650500, China
推荐引用方式 GB/T 7714	Ren YD,Zhu YN,Wang Q,et al. Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption[J]. Scientific Reports,2017,7(X):e3198.
APA	Ren YD.,Zhu YN.,Wang Q.,Xiang H.,Wang BY.,...&wangboyi1978@163.com.(2017).Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption.Scientific Reports,7(X),e3198.
MLA	Ren YD,et al."Transcriptome of Pterospermum kingtungense provides implications on the mechanism underlying its rapid vegetative growth and limestone adaption".Scientific Reports 7.X(2017):e3198.