Two mitochondrial genomes in Alcedinidae (Ceryle rudis/Halcyon pileata) and the phylogenetic placement of Coraciiformes

CORC > 昆明动物研究所 > 昆明动物研究所 > 遗传资源与进化国家重点实验室

	Two mitochondrial genomes in Alcedinidae (Ceryle rudis/Halcyon pileata) and the phylogenetic placement of Coraciiformes
	Sun XM 1; Zhao RP 2; Huang L1; Zhang T 1; Gong J 1; Jing MD1; ingmeidong@126.com ; huangdl@126.com
刊名	Genetica
	2017
卷号	期号:页码:published online
关键词	Ceryle Rudis Halcyon Pileata Coraciiformes Mitochondrial Genome Phylogenetic Placement
英文摘要	Coraciiformes comprises 209 species belonging to ten families with significant divergence on external morphologies and life styles. The phylogenetic placement of Coraciiformes was still in debate. Here, we determined the complete mitochondrial genomes (mitogenomes) of Crested Kingfisher (Ceryle rudis) and Black-capped Kingfisher (Halcyon pileata). The mitogenomes were 17,355 bp (C. rudis) and 17,612 bp (H. pileata) in length, and both of them contained 37 genes (two rRNA genes, 22 tRNA genes and 13 protein-coding genes) and one control region. The gene organizations and characters of two mitogenomes were similar with those of other mitogenomes in Coraciiformes, however the sizes and nucleotide composition of control regions in different mitogenomes were significantly different. Phylogenetic trees were constructed with both Bayesian and Maximum Likelihood methods based on mitogenome sequences from 11 families of six orders. The trees based on two different data sets supported the basal position of Psittacidae (Psittaciformes), the closest relationship between Cuculiformes (Cuculidae) and Trogoniformes (Trogonidae), and the close relationship between Coraciiformes and Piciformes. The phylogenetic placement of the clade including Cuculiformes and Trogoniformes has not been resolved in present study, which need further investigations with more molecular markers and species. The mitogenome sequences presented here provided valuable data for further taxonomic studies on Coraciiformes and other related groups.
语种	英语
资助机构	This work was supported by the Natural Scien- tific Foundation of China (No. 31371252) and the open project from the State Key Laboratory of Genetic Resource and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (GREKF15-04). ; This work was supported by the Natural Scien- tific Foundation of China (No. 31371252) and the open project from the State Key Laboratory of Genetic Resource and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (GREKF15-04). ; This work was supported by the Natural Scien- tific Foundation of China (No. 31371252) and the open project from the State Key Laboratory of Genetic Resource and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (GREKF15-04). ; This work was supported by the Natural Scien- tific Foundation of China (No. 31371252) and the open project from the State Key Laboratory of Genetic Resource and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences (GREKF15-04).
内容类型	期刊论文
源URL	[http://159.226.149.26:8080/handle/152453/12015]
专题	昆明动物研究所_遗传资源与进化国家重点实验室昆明动物研究所_基因起源组
通讯作者	ingmeidong@126.com; huangdl@126.com
作者单位	1.School of Life Sciences, Ludong University, 186#, Hongqi Central Road, Yantai 264025, Shandong, People’s Republic of China 2.School of Life Sciences, Ludong University, 186#, Hongqi Central Road, Yantai 264025, Shandong, People’s Republic of China
推荐引用方式 GB/T 7714	Sun XM,Zhao RP,Huang L,et al. Two mitochondrial genomes in Alcedinidae (Ceryle rudis/Halcyon pileata) and the phylogenetic placement of Coraciiformes[J]. Genetica,2017,(*):published online.
APA	Sun XM.,Zhao RP.,Huang L.,Zhang T.,Gong J.,...&huangdl@126.com.(2017).Two mitochondrial genomes in Alcedinidae (Ceryle rudis/Halcyon pileata) and the phylogenetic placement of Coraciiformes.Genetica,(*),published online.
MLA	Sun XM,et al."Two mitochondrial genomes in Alcedinidae (Ceryle rudis/Halcyon pileata) and the phylogenetic placement of Coraciiformes".Genetica .(2017):published online.