Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic | |
Gentekaki, Eleni1; Kolisko, Martin2; Gong, Yingchun3; Lynn, Denis4,5 | |
刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
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2017 | |
卷号 | 106期号:1页码:1-5 |
关键词 | Ciliophora Peritrichia Sessilida Mobilida Phylogenomics |
ISSN号 | 1055-7903 |
DOI | 10.1016/j.ympev.2016.09.016 |
英文摘要 | The phylum Ciliophora is one of the most broadly studied protozoan lineages. The era of molecular investigation has brought forth a major ongoing debate: is the subclass Peritrichia Stein, 1859 monophyletic? Numerous analyses mostly using the small subunit (SSU) rRNA gene have failed to recover the Mobilida and Sessilida, the two peritrich orders, as sister clades. Here we have sequenced five peritrich species - three sessilids and two mobilids. We constructed a supermatrix of 158 genes and 44,696 characters for 24 ciliate species, and as outgroup taxa, nine species from the Apicomplexa and four from the Dinophyceae. Our analyses using both maximum likelihood and Bayesian methods recover a monophyletic class Oligohymenophorea and two robust clades within it. The first Glade is a monophyletic Peritrichia with the orders Sessilida and Mobilida maximally supported as sister clades. The second oligohymenophorean Glade includes species of the subclasses Scuticociliatia and Hymenostomatia, which are sister clades. Our analyses resolve a long-standing debate in ciliate molecular phylogenetics and provide support for the classical view that the morphological features of the two peritrich orders Mobilida and Sessilida arose by descent from the same common ancestor and are not the result of convergence. (C) 2016 Elsevier Inc. All rights reserved. |
资助项目 | Natural Sciences and Engineering Research Council of Canada Discovery grant[6544-13] ; National Natural Science Foundation of China[30900130] ; Chinese Academy of Sciences |
WOS关键词 | RNA GENE-SEQUENCES ; TRICHODINA-PEDICULUS CILIOPHORA ; PHYLOGENETIC-RELATIONSHIPS ; MURMANICA CILIOPHORA ; MOLECULAR PHYLOGENY ; SPECIES TREES ; OLIGOHYMENOPHOREA ; RECONSIDERATION ; RECONSTRUCTION ; EPICARCHESIUM |
WOS研究方向 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
语种 | 英语 |
出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
WOS记录号 | WOS:000388059500001 |
资助机构 | Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; Natural Sciences and Engineering Research Council of Canada Discovery grant ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences ; Chinese Academy of Sciences |
内容类型 | 期刊论文 |
源URL | [http://ir.ihb.ac.cn/handle/342005/34067] ![]() |
专题 | 水生生物研究所_水生生物多样性与资源保护研究中心_期刊论文 |
通讯作者 | Gentekaki, Eleni |
作者单位 | 1.Mae Fah Luang Univ, Sch Sci, Chiang Rai 57100, Thailand 2.Univ British Columbia, Dept Bot, Vancouver, BC V6T 1Z4, Canada 3.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China 4.Univ Guelph, Dept Integrat Biol, Guelph, ON N1G 2W1, Canada 5.Univ British Columbia, Dept Zool, Vancouver, BC V6T 1Z4, Canada |
推荐引用方式 GB/T 7714 | Gentekaki, Eleni,Kolisko, Martin,Gong, Yingchun,et al. Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2017,106(1):1-5. |
APA | Gentekaki, Eleni,Kolisko, Martin,Gong, Yingchun,&Lynn, Denis.(2017).Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic.MOLECULAR PHYLOGENETICS AND EVOLUTION,106(1),1-5. |
MLA | Gentekaki, Eleni,et al."Phylogenomics solves a long-standing evolutionary puzzle in the ciliate world: The subclass Peritrichia is monophyletic".MOLECULAR PHYLOGENETICS AND EVOLUTION 106.1(2017):1-5. |
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