Development of genome-wide SNPs for population genetics of Collichthys lucidus

doi:10.1007/s12686-017-0911-1

CORC > 自然资源部第一海洋研究所 > 自然资源部第一海洋研究所 > 业务部门 > 海洋生态研究中心

	Development of genome-wide SNPs for population genetics of Collichthys lucidus
	Zhao, Linlin; Jiang, Meijie; Qu, Fangyuan; Yi, Dan; Wang, Shouqiang; Zhang, Zhaohui
刊名	CONSERVATION GENETICS RESOURCES
	2018-12
卷号	10 期号:4 页码:893-896
关键词	Collichthys lucidus High-throughput sequencing Single nucleotide polymorphism Population genetics
ISSN号	1877-7252
DOI	10.1007/s12686-017-0911-1
英文摘要	The assessment of genetic diversity and genetic structure is critical for fisheries management and conservation. Traditional markers may fail to reveal precise population genetic pattern in marine species. Nevertheless, the solution of this shortcoming could be solved by advanced high-throughput sequencing which allows genotyping thousands of markers on genome-wide scale. In this study, we generated single nucleotide polymorphism (SNP) dataset using restriction site-associated DNA sequencing for Collichthys lucidus of 55 individuals from three locations in the Chinese coastal waters. After applying careful filtering criteria, we obtained 169 624 genome-wide SNPs that performed well for population genetics and population assignment. Based on the SNPs, evident genetic differentiation was observed among C. lucidus populations. The SNPs identified in our study could be used as powerful tools in further genetic and evolutionary studies of C. lucidus.
资助项目	National Natural Science Foundation of China[41706187]
WOS研究方向	Biodiversity & Conservation ; Genetics & Heredity
语种	英语
出版者	SPRINGER
WOS记录号	WOS:000456651300068
内容类型	期刊论文
源URL	[http://ir.fio.com.cn:8080/handle/2SI8HI0U/10943]
专题	业务部门_海洋生态研究中心
通讯作者	Zhang, Zhaohui
作者单位	SOA, Inst Oceanog 1, Qingdao 266003, Shandong, Peoples R China
推荐引用方式 GB/T 7714	Zhao, Linlin,Jiang, Meijie,Qu, Fangyuan,et al. Development of genome-wide SNPs for population genetics of Collichthys lucidus[J]. CONSERVATION GENETICS RESOURCES,2018,10(4):893-896.
APA	Zhao, Linlin,Jiang, Meijie,Qu, Fangyuan,Yi, Dan,Wang, Shouqiang,&Zhang, Zhaohui.(2018).Development of genome-wide SNPs for population genetics of Collichthys lucidus.CONSERVATION GENETICS RESOURCES,10(4),893-896.
MLA	Zhao, Linlin,et al."Development of genome-wide SNPs for population genetics of Collichthys lucidus".CONSERVATION GENETICS RESOURCES 10.4(2018):893-896.