BGI-RIS: an integrated information resource and comparative analysis   workbench for rice genomics

doi:10.1093/nar/gkh085

CORC > 北京大学 > 生命科学学院

	BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics
	Zhao, WM ; Wang, J ; He, XM ; Huang, XB ; Jiao, YZ ; Dai, MT ; Wei, SL ; Fu, J ; Chen, Y ; Ren, XY ; Zhang, Y ; Ni, PX ; Zhang, JG ; Lil, SG ; Wang, J ; Wong, GKS ; Zhao, HY ; Yu, J ; Yang, HM ; Wang, J
刊名	核酸研究
	2004
关键词	DRAFT SEQUENCE PLANT GENOMICS DNA PREDICTION JAPONICA DATABASE GRASSES GENES
DOI	10.1093/nar/gkh085
英文摘要	Rice is a major food staple for the world's population and serves as a model species in cereal genome research. The Beijing Genomics Institute (BGI) has long been devoting itself to sequencing, information analysis and biological research of the rice and other crop genomes. In order to facilitate the application of the rice genomic information and to provide a foundation for functional and evolutionary studies of other important cereal crops, we implemented our Rice Information System (BGI-RIS), the most up-to-date integrated information resource as well as a workbench for comparative genomic analysis. In addition to comprehensive data from Oryza sativa L. ssp. indica sequenced by BGI, BGI-RIS also hosts carefully curated genome information from Oryza sativa L. ssp. japonica and EST sequences available from other cereal crops. In this resource, sequence contigs of indica (93-11) have been further assembled into Mbp-sized scaffolds and -anchored onto the rice chromosomes referenced to physical/genetic markers, cDNAs and BAC-end sequences. We have annotated the rice genomes for gene content, repetitive elements, gene duplications (tandem and segmental) and single nucleotide polymorphisms between rice subspecies. Designed as a basic platform, BGI-RIS presents the sequenced genomes and related information in systematic and graphical ways for the convenience of in-depth comparative studies (http://rise.genomics.org.cn/).; Biochemistry & Molecular Biology; SCI(E); 0; ARTICLE; ,SI; D377-D382; 32
语种	英语
内容类型	期刊论文
源URL	[http://ir.pku.edu.cn/handle/20.500.11897/400574]
专题	生命科学学院
推荐引用方式 GB/T 7714	Zhao, WM,Wang, J,He, XM,et al. BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics[J]. 核酸研究,2004.
APA	Zhao, WM.,Wang, J.,He, XM.,Huang, XB.,Jiao, YZ.,...&Wang, J.(2004).BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics.核酸研究.
MLA	Zhao, WM,et al."BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics".核酸研究 (2004).