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	Characterization of the genome of a nocardia strain isolated from soils in the qinghai-tibetan plateau that specifically degrades crude oil and of this biodegradation
	Yang, Ruiqi1,2,4; Liu, Guangxiu1,2; Chen, Tuo2,3; Li, Shiweng2,5; An, Lizhe6; Zhang, Gaosen1,2; Li, Guoli5; Chang, Sijing2,3,4; Zhang, Wei1,2; Chen, Ximing1,2
刊名	Genomics
	2019-05-01
卷号	111期号:3页码:356-366
关键词	Nocardia soli Qinghai-tibetan plateau Crude oil Degradation Genome sequencing Comparative genomics
ISSN号	0888-7543
DOI	10.1016/j.ygeno.2018.02.010
通讯作者	Liu, guangxiu(liugx@lzb.ac.cn) ; Chen, tuo(chentuo@lzb.ac.cn)
英文摘要	A strain of nocardia isolated from crude oil-contaminated soils in the qinghai-tibetan plateau degrades nearly all components of crude oil. this strain was identified as nocardia soli y48, and its growth conditions were determined. complete genome sequencing showed that n. soli y48 has a 7.3 mb genome and many genes responsible for hydrocarbon degradation, biosurfactant synthesis, emulsification and other hydrocarbon degradation-related metabolisms. analysis of the clusters of orthologous groups (cogs) and genomic islands (gis) revealed that y48 has undergone significant gene transfer events to adapt to changing environmental conditions (crude oil contamination). the structural features of the genome might provide a competitive edge for the survival of n. soli y48 in oil-polluted environments and reflect the adaptation of coexisting bacteria to distinct nutritional niches.
收录类别	SCI
WOS关键词	HYDROCARBON DEGRADATION ; SUBSTRATE-SPECIFICITY ; SEQUENCE-ANALYSIS ; PSEUDOMONAS SP ; PERSIAN-GULF ; GENE ; IDENTIFICATION ; PURIFICATION ; HYDROXYLASE ; BACTERIA
WOS研究方向	Biotechnology & Applied Microbiology ; Genetics & Heredity
WOS类目	Biotechnology & Applied Microbiology ; Genetics & Heredity
语种	英语
出版者	ACADEMIC PRESS INC ELSEVIER SCIENCE
WOS记录号	WOS:000470905800017
内容类型	期刊论文
URI标识	http://www.corc.org.cn/handle/1471x/2555414
专题	寒区旱区环境与工程研究所
通讯作者	Liu, Guangxiu; Chen, Tuo
作者单位	1.Chinese Acad Sci, Northwest Inst Ecoenvironm & Resources, Key Lab Desert & Desertificat, Lanzhou 730000, Gansu, Peoples R China 2.Key Lab Extreme Environm Microbial Resources & En, Lanzhou 730000, Gansu, Peoples R China 3.Chinese Acad Sci, Northwest Inst Ecoenvironm & Resources, State Key Lab Cryospher Sci, Lanzhou 730000, Gansu, Peoples R China 4.Univ Chinese Acad Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China 5.Lanzhou Jiaotong Univ, Sch Chem & Biol Engn, Lanzhou 730070, Gansu, Peoples R China 6.Lanzhou Univ, Sch Life Sci, Lanzhou 730000, Gansu, Peoples R China
推荐引用方式 GB/T 7714	Yang, Ruiqi,Liu, Guangxiu,Chen, Tuo,et al. Characterization of the genome of a nocardia strain isolated from soils in the qinghai-tibetan plateau that specifically degrades crude oil and of this biodegradation[J]. Genomics,2019,111(3):356-366.
APA	Yang, Ruiqi.,Liu, Guangxiu.,Chen, Tuo.,Li, Shiweng.,An, Lizhe.,...&Zhang, Binglin.(2019).Characterization of the genome of a nocardia strain isolated from soils in the qinghai-tibetan plateau that specifically degrades crude oil and of this biodegradation.Genomics,111(3),356-366.
MLA	Yang, Ruiqi,et al."Characterization of the genome of a nocardia strain isolated from soils in the qinghai-tibetan plateau that specifically degrades crude oil and of this biodegradation".Genomics 111.3(2019):356-366.

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