Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere

doi:10.18520/cs/v116/i7/1218-1228

	Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere
	Ge, Guang Bo 1,3; Gao, Rui 2; Hao, Da Cheng 2; Hu, Wenli 2; Song, Song 2; Li, Shi Yang 1
刊名	CURRENT SCIENCE
	2019-04-10
卷号	116 期号:7 页码:1218-1228
关键词	Biodegradation polycyclic aromatic hydrocarbon Talaromyces verruculosus Taxus mairei transcriptome sequencing
ISSN号	0011-3891
DOI	10.18520/cs/v116/i7/1218-1228
通讯作者	Hao, Da Cheng(hao@djtu.edu.cn)
英文摘要	The present study aims to examine polycyclic aromatic hydrocarbon (PAH)-degrading fungal strains isolated from rhizosphere soil of Taxus mairei. Talaromyces verruculosus strain DJTU-SJ5 showed the higher PAH degradation than other strains. Improved degradation of five PAHs was attained using the two-member consortium. The industrial potential of DJTU-SJ5 has been highlighted. The transcriptome profiles of DJTU-SJ5 before and after PAH challenge were decoded by high-throughput RNA sequencing. A total of 33,084 unigenes were obtained by de novo assembly of 19.9 Gb clean sequencing reads; 10,532, 1,104 and 11,779 unigenes were expressed distinctly between control and phenanthrene (phen)-treated samples; control and pyrene (pyre)-treated samples, and phen and pyre respectively. These included numerous PAH degradation, defence and stress-related genes. The degradation pathway of PAHs in strain DJTU-SJ5 is proposed based on the metabolites and transcriptome analyses.
资助项目	Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project[477668/2012-7] ; Mackenzie Presbyterian University, Sao Paulo, Brazil
WOS关键词	BIODEGRADATION ; DEGRADATION ; PHENANTHRENE ; COMMUNITY ; IDENTIFICATION ; PATHWAY ; PYRENE ; PAHS
WOS研究方向	Science & Technology - Other Topics
语种	英语
出版者	INDIAN ACAD SCIENCES
WOS记录号	WOS:000463900200033
资助机构	Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Conselho Nacional de DesenvolvimentoCientifico e Tecnologico Project ; Mackenzie Presbyterian University, Sao Paulo, Brazil ; Mackenzie Presbyterian University, Sao Paulo, Brazil
内容类型	期刊论文
源URL	[http://cas-ir.dicp.ac.cn/handle/321008/165660]
专题	大连化学物理研究所_中国科学院大连化学物理研究所
通讯作者	Hao, Da Cheng
作者单位	1.Chinese Acad Sci, Dalian Inst Chem Phys, Lab Pharmaceut Resource Discovery, Dalian 116023, Peoples R China 2.Dalian Jiaotong Univ, Sch Environm & Chem Engn, Dalian 116028, Peoples R China 3.Shanghai Univ Tradit Chinese Med, Inst Interdisciplinary Med, Shanghai 201203, Peoples R China
推荐引用方式 GB/T 7714	Ge, Guang Bo,Gao, Rui,Hao, Da Cheng,et al. Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere[J]. CURRENT SCIENCE,2019,116(7):1218-1228.
APA	Ge, Guang Bo,Gao, Rui,Hao, Da Cheng,Hu, Wenli,Song, Song,&Li, Shi Yang.(2019).Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere.CURRENT SCIENCE,116(7),1218-1228.
MLA	Ge, Guang Bo,et al."Transcriptome profile of polycyclic aromatic hydrocarbon-degrading fungi isolated from Taxus rhizosphere".CURRENT SCIENCE 116.7(2019):1218-1228.