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Photoregulating rna digestion using azobenzene linked dumbbell antisense oligodeoxynucleotides
Wu, Li1,2; He, Yujian1,2; Tang, Xinjing2
刊名Bioconjugate chemistry
2015-06-01
卷号26期号:6页码:1070-1079
ISSN号1043-1802
DOI10.1021/acs.bioconjchem.5b00125
通讯作者He, yujian(heyujian@ucas.ac.cn)
英文摘要Introduction of 4,4'-bis(hydroxymethyl)-azobenzene (azo) to dumbbell hairpin oligonucleotides at the loop position was able to reversibly control the stability of the whole hairpin structure via uv or visible light irradiation. here, we designed and synthesized a series of azobenzene linked dumbbell antisense oligodeoxynucleotides (asodns) containing two terminal hairpins that are composed of an asodn and a short inhibitory sense strand. thermal melting studies of these azobenzene linked dumbbell asodns indicated that efficient trans to cis photoisomerization of azobenzene moieties induced large difference in thermal stability (delta t-m, = 12.1-21.3 degrees c). in addition, photomodulation of their rna binding abilities and rna digestion by rnase h was investigated. the trans-azobenzene linked asodns with the optimized base pairs between asodn strands and inhibitory sense strands could only bind few percentage of the target rna, while it was able to recover their binding to the target rna and degrade it by rnase h after light irradiation. upon optimization, it is promising to use these azobenzene linked asodns for reversible spatial and temporal regulation of antisense activities based on both steric binding and rna digestion by rnase h.
WOS关键词HUMAN LEUKEMIA-CELLS ; GENE-EXPRESSION ; REVERSIBLE PHOTOREGULATION ; CAGED SIRNAS ; DNA ; LIGHT ; OLIGONUCLEOTIDES ; HYBRIDIZATION ; ACTIVATION ; NUCLEOSIDE
WOS研究方向Biochemistry & Molecular Biology ; Chemistry
WOS类目Biochemical Research Methods ; Biochemistry & Molecular Biology ; Chemistry, Multidisciplinary ; Chemistry, Organic
语种英语
出版者AMER CHEMICAL SOC
WOS记录号WOS:000356754400014
内容类型期刊论文
URI标识http://www.corc.org.cn/handle/1471x/2376393
专题中国科学院大学
通讯作者He, Yujian
作者单位1.Univ Chinese Acad Sci, Sch Chem & Chem Engn, Beijing 100049, Peoples R China
2.Peking Univ, Sch Pharmaceut Sci, State Key Lab Nat & Biomimet Drugs, Beijing 100191, Peoples R China
推荐引用方式
GB/T 7714
Wu, Li,He, Yujian,Tang, Xinjing. Photoregulating rna digestion using azobenzene linked dumbbell antisense oligodeoxynucleotides[J]. Bioconjugate chemistry,2015,26(6):1070-1079.
APA Wu, Li,He, Yujian,&Tang, Xinjing.(2015).Photoregulating rna digestion using azobenzene linked dumbbell antisense oligodeoxynucleotides.Bioconjugate chemistry,26(6),1070-1079.
MLA Wu, Li,et al."Photoregulating rna digestion using azobenzene linked dumbbell antisense oligodeoxynucleotides".Bioconjugate chemistry 26.6(2015):1070-1079.
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