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	Gcmeta: a global catalogue of metagenomics platform to support the archiving, standardization and analysis of microbiome data
	Shi, Wenyu1; Qi, Heyuan1; Sun, Qinglan1; Fan, Guomei1; Liu, Shuangjiang1,2; Wang, Jun3; Zhu, Baoli3,4,5,6; Liu, Hongwei7; Zhao, Fangqing8; Wang, Xiaochen1
刊名	Nucleic acids research
	2019-01-08
卷号	47期号:D1页码:D637-d648
ISSN号	0305-1048
DOI	10.1093/nar/gky1008
通讯作者	Wu, linhuan(wulh@im.ac.cn) ; Ma, juncai(ma@im.ac.cn)
英文摘要	Meta-omics approaches have been increasingly used to study the structure and function of the microbial communities. a variety of large-scale collaborative projects are being conducted to encompass samples from diverse environments and habitats. this change has resulted in enormous demands for long-term data maintenance and capacity for data analysis. the global catalogue of metagenomics (gcmeta) is a part of the chinese academy of sciences initiative of microbiome(cas-cmi)', which focuses on studying the human and environmental microbiome, establishing depositories of samples, strains and data, as well as promoting international collaboration. to accommodate and rationally organize massive datasets derived from several thousands of human and environmental microbiome samples, gcmeta features a database management system for archiving and publishing data in a standardized way. another main feature is the integration of more than ninety web-based data analysis tools and workflows through a docker platform which enables data analysis by using various operating systems. this platform has been rapidly expanding, and now hosts data from the cas-cmi and a number of other ongoing research projects. in conclusion, this platform presents a powerful and user-friendly service to support worldwide collaborative efforts in the field of meta-omics research. this platform is freely accessible at https://gcmeta.wdcm.org/.
WOS关键词	READ ALIGNMENT ; MINIMUM INFORMATION ; GENOME ; GENE ; TRANSCRIPTOME ; ALGORITHM ; ACCURATE ; ANNOTATION ; QUALITY ; QUANTIFICATION
WOS研究方向	Biochemistry & Molecular Biology
WOS类目	Biochemistry & Molecular Biology
语种	英语
出版者	OXFORD UNIV PRESS
WOS记录号	WOS:000462587400089
内容类型	期刊论文
URI标识	http://www.corc.org.cn/handle/1471x/2374259
专题	计算机网络信息中心
通讯作者	Wu, Linhuan; Ma, Juncai
作者单位	1.Chinese Acad Sci, Inst Microbiol, Microbial Resource & Big Data Ctr, Beijing 100101, Peoples R China 2.Chinese Acad Sci, Inst Microbiol, State Key Lab Microbial Resources, Beijing 100101, Peoples R China 3.Chinese Acad Sci, Inst Microbiol, CAS Key Lab Pathogen Microbiol & Immunol, Beijing 100101, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 5.Zhejiang Univ, Coll Med, Attainted Hosp 1, Collaborat Innovat Ctr Diag & Treatment Infect Di, Hangzhou 310058, Zhejiang, Peoples R China 6.Beijing Key Lab Antimicrobial Resistance & Pathog, Beijing 100101, Peoples R China 7.Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing 100101, Peoples R China 8.Chinese Acad Sci, Beijing Inst Life Sci, Computat Genom Lab, Beijing 100101, Peoples R China 9.Chinese Acad Sci, Comp Network Informat Ctr, Internet Things Informat Technol & Applicat Lab, Beijing 100101, Peoples R China
推荐引用方式 GB/T 7714	Shi, Wenyu,Qi, Heyuan,Sun, Qinglan,et al. Gcmeta: a global catalogue of metagenomics platform to support the archiving, standardization and analysis of microbiome data[J]. Nucleic acids research,2019,47(D1):D637-d648.
APA	Shi, Wenyu.,Qi, Heyuan.,Sun, Qinglan.,Fan, Guomei.,Liu, Shuangjiang.,...&Ma, Juncai.(2019).Gcmeta: a global catalogue of metagenomics platform to support the archiving, standardization and analysis of microbiome data.Nucleic acids research,47(D1),D637-d648.
MLA	Shi, Wenyu,et al."Gcmeta: a global catalogue of metagenomics platform to support the archiving, standardization and analysis of microbiome data".Nucleic acids research 47.D1(2019):D637-d648.

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