Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family

doi:10.1186/s12864-017-3956-3

CORC > 武汉植物园 > 中国科学院武汉植物园

	Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family
	Moore, Michael J.3; Sun, Yanxia 2; Lin, Nan 2,4; Adelalu, Kole F.2,4; Meng, Aiping 2; Jian, Shuguang 1; Yang, Linsen 5; Li, Jianqiang 2; Wang, Hengchang 2
刊名	BMC GENOMICS
	2017-08-09
卷号	18 页码:10
关键词	Early-diverging eudicots Circaeasteraceae Plastome Rearrangements Gene loss Phylogenetic analyses
ISSN号	1471-2164
DOI	10.1186/s12864-017-3956-3
英文摘要	Background: Among the 13 familiesofearly-diverging eudicots, only Circaeasteraceae (Ranunculales),which consists of the two monotypic genera Circaeaster and Kingdonia, lacks a published complete plastome sequence. In addition, the phylogenetic position of Circaeasteraceae as sister to Lardizabalaceae has only been weakly or moderately supported in previous studies using smaller data sets. Moreover, previous plastome studies have documented a number of novel structural rearrangements amongearly-divergent eudicots. Hence it is important to sequence plastomes from Circaeasteraceae to better understand plastome evolution inearly-diverging eudicots and to further investigate the phylogenetic position of Circaeasteraceae. Results: Using an Illumina HiSeq 2000, complete plastomes were sequenced from both living members of Circaeasteraceae: Circaeaster agrestis and Kingdonia uniflora. Plastome structure and gene content were compared between these two plastomes, and with those of otherearly-diverging eudicot plastomes. Phylogenetic analysis of a 79-gene, 99-taxon data set including exemplars of all families of early-diverging eudicots was conducted to resolve the phylogenetic position of Circaeasteraceae. Both plastomes possess the typical quadripartite structure of land plant plastomes. However, a large similar to 49 kb inversion and a small similar to 3.5 kb inversion were found in the large single-copy regions of both plastomes, while Circaeaster possesses a number of other rearrangements, particularly in the Inverted Repeat. In addition, infA was found to be a pseudogene and accD was found to be absent within Circaeaster, whereas all ndh genes, except for ndhE and ndhJ, were found to be either pseudogenized (psi ndhA, psi ndhB, psi ndhD, psi ndhH and psi ndhK) or absent (ndhC, ndhF, ndhI and ndhG) in Kingdonia. Circaeasteraceae was strongly supported as sister to Lardizabalaceae in phylogenetic analyses. Conclusion: The first plastome sequencing of Circaeasteraceae resulted in the discovery of several unusual rearrangements and the loss of ndh genes, and confirms the sister relationship between Circaeasteraceae and Lardizabalaceae. This research provides new insight to characterize plastome structural evolution in early-diverging eudicots and to better understand relationships within Ranunculales.
资助项目	National Natural Science Foundation of China[31600176] ; National Natural Science Foundation of China[31370242] ; National Natural Science Foundation of China[31370223] ; NSTIPC[2013FY111200] ; SPRPCAS[XDA13020500]
WOS研究方向	Biotechnology & Applied Microbiology ; Genetics & Heredity
语种	英语
出版者	BIOMED CENTRAL LTD
WOS记录号	WOS:000408034900001
内容类型	期刊论文
源URL	[http://202.127.146.157/handle/2RYDP1HH/1327]
专题	中国科学院武汉植物园
通讯作者	Li, Jianqiang; Wang, Hengchang
作者单位	1.Chinese Acad Sci, South China Bot Garden, Guangzhou, Guangdong, Peoples R China 2.Chinese Acad Sci, Wuhan Bot Garden, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan, Hubei, Peoples R China 3.Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA 4.Univ Chinese Acad Sci, Beijing, Peoples R China 5.Adm Shennongjia Natl Pk, Hubei Key Lab Shennongjia Golden Monkey Conservat, Shennongjia, Hubei, Peoples R China
推荐引用方式 GB/T 7714	Moore, Michael J.,Sun, Yanxia,Lin, Nan,et al. Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family[J]. BMC GENOMICS,2017,18:10.
APA	Moore, Michael J..,Sun, Yanxia.,Lin, Nan.,Adelalu, Kole F..,Meng, Aiping.,...&Wang, Hengchang.(2017).Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family.BMC GENOMICS,18,10.
MLA	Moore, Michael J.,et al."Complete plastome sequencing of both living species of Circaeasteraceae (Ranunculales) reveals unusual rearrangements and the loss of the ndh gene family".BMC GENOMICS 18(2017):10.