Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress

CORC > 南海海洋研究所 > 中国科学院南海海洋研究所 > 中科院海洋生物资源可持续利用重点实验室

	Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress
	Huang, W; Ren, CH; Li, HM; Huo, D; Wang, YH; Jiang, X; Tian, YS; Luo, P; Chen, T; Hu, CQ
刊名	PLOS ONE
	2017
卷号	12 期号:6 页码:e0178604-
通讯作者	chan1010@scsio.ac.cn ; hucq@scsio.ac.cn
中文摘要	The Pacific white shrimp (Litopenaeus vannamei) is an important cultured crustacean species worldwide. However, little is known about the molecular mechanism of this species involved in the response to cold stress. In this study, four separate RNA-Seq libraries of L. vannamei were generated from 13 degrees C stress and control temperature. Total 29,662 of Unigenes and overall of 19,619 annotated genes were obtained. Three comparisons were carried out among the four libraries, in which 72 of the top 20% of differentially-expressed genes were obtained, 15 GO and 5 KEGG temperature-sensitive pathways were fished out. Catalytic activity (GO: 0003824) and Metabolic pathways (ko01100) were the most annotated GO and KEGG pathways in response to cold stress, respectively. In addition, Calcium, MAPK cascade, Transcription factor and Serine/threonine-protein kinase signal pathway were picked out and clustered. Serine/threonine-protein kinase signal pathway might play more important roles in cold adaptation, while other three signal pathway were not widely transcribed. Our results had summarized the differentially-expressed genes and suggested the major important signaling pathways and related genes. These findings provide the first profile insight into the molecular basis of L. vannamei response to cold stress.
内容类型	期刊论文
源URL	[http://ir.scsio.ac.cn/handle/344004/16297]
专题	南海海洋研究所_中科院海洋生物资源可持续利用重点实验室
推荐引用方式 GB/T 7714	Huang, W,Ren, CH,Li, HM,et al. Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress[J]. PLOS ONE,2017,12(6):e0178604-.
APA	Huang, W.,Ren, CH.,Li, HM.,Huo, D.,Wang, YH.,...&Hu, CQ.(2017).Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress.PLOS ONE,12(6),e0178604-.
MLA	Huang, W,et al."Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress".PLOS ONE 12.6(2017):e0178604-.