Tandem Duplication and Random Loss for mitogenome rearrangement in Symphurus (Teleost: Pleuronectiformes)

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	Tandem Duplication and Random Loss for mitogenome rearrangement in Symphurus (Teleost: Pleuronectiformes)
	Shi, Wei 1; Gong, Li 1; Wang, Shu-Ying 1; Miao, Xian-Guang 1; Kong, Xiao-Yu 1
刊名	BMC GENOMICS
	2015
卷号	16 页码:355-
关键词	Flatfish Mitogenome Gene rearrangement O-L-like structure Mitochondrial replication
通讯作者	xykong@scsio.ac.cn
英文摘要	Background: The mitochondrial genomes (mitogenomes) of flatfishes (Pleuronectiformes) exhibit highly diversified types of large-scale gene rearrangements. We have reported that the mitogenomes of Crossorhombus azureus (Bothidae), Samariscus latus (Samaridae) and Cynoglossus fishes (Cynoglossidae) show different types of gene rearrangements. Results: In the present study, the complete mitogenomes of two Symphurus species (Cynoglossidae), Symphurus plagiusa and Symphurus orientalis, were determined. The gene order in the S. plagiusa mitogenome is the same as that of a typical vertebrate (without any gene rearrangements). Surprisingly, large-scale gene rearrangements have occurred in S. orientalis. In the rearranged fragment from the control region (CR) to the WANCY tRNA cluster (tRNA cluster of tRNA-W, tRNA-A, tRNA-N, tRNA-C and tRNA-Y) in the S. orientalis mitogenome, tRNA-V and tRNA-M have been translocated to the 3' end of the 16S rRNA gene, with six large intergenic spacers over 20 bp in length. In addition, an origin for light-strand replication (O-L) structure that is typically located in the WANCY region was absent in both the S. plagiusa and S. orientalis mitogenomes. It is generally recognized that a sequence in the WANCY region that encodes tRNAs forms a hairpin structure (O-L-like structure) and can act as the O-L when the typical locus is lost. Moreover, an additional OL-like structure was identified near the control region in the S. plagiusa mitogenome. Conclusions: The positions of the intergenic spacers and the rearranged genes of the S. orientalis mitogenome strongly indicate that the mechanism underlying the rearrangement of this mitogenome was Tandem Duplication and Random Loss. Additionally, two O-L-like regions substituting for the typical locus were found in the S. plagiusa mitogenome. We speculate that the ancestral mitogenomes of S. plagiusa and S. orientalis also had this characteristic, such that if both O-L-like structures functioned during mitochondrial replication, they could initiate duplicate replications of the light strand (L-strand), leading to duplication of the region between the two structures. We consider that this mechanism may account for the gene duplication that occurred during the gene rearrangement process in the evolution of the ancestral mitogenome to the S. orientalis mitogenome.
学科主题	Biotechnology & Applied Microbiology; Genetics & Heredity
原文出处	1471-2164
内容类型	期刊论文
源URL	[http://ir.scsio.ac.cn/handle/344004/14831]
专题	南海海洋研究所_中科院海洋生物资源可持续利用重点实验室
作者单位	1.[Shi, Wei 2.Gong, Li 3.Wang, Shu-Ying 4.Miao, Xian-Guang 5.Kong, Xiao-Yu] Chinese Acad Sci, South China Sea Inst Oceanol, CAS Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510301, Guangdong, Peoples R China
推荐引用方式 GB/T 7714	Shi, Wei,Gong, Li,Wang, Shu-Ying,et al. Tandem Duplication and Random Loss for mitogenome rearrangement in Symphurus (Teleost: Pleuronectiformes)[J]. BMC GENOMICS,2015,16:355-.
APA	Shi, Wei,Gong, Li,Wang, Shu-Ying,Miao, Xian-Guang,&Kong, Xiao-Yu.(2015).Tandem Duplication and Random Loss for mitogenome rearrangement in Symphurus (Teleost: Pleuronectiformes).BMC GENOMICS,16,355-.
MLA	Shi, Wei,et al."Tandem Duplication and Random Loss for mitogenome rearrangement in Symphurus (Teleost: Pleuronectiformes)".BMC GENOMICS 16(2015):355-.